http://www.k-wave.org/forum/topic/possible-small-bug-hdf5-source-code Support for the k-Wave MATLAB toolbox en-US Wed, 13 May 2026 23:32:33 +0000 http://bbpress.org/?v=1.0.2 q http://www.k-wave.org/forum/search.php http://www.k-wave.org/forum/topic/possible-small-bug-hdf5-source-code#post-9127 Tue, 20 Aug 2024 13:01:56 +0000 aarledaniek 9127@http://www.k-wave.org/forum/ <p>Dear k-Wave,</p> <p>When compiling the CUDA source code on Linux (HPC cluster, dynamic linking), I encountered a possible small bug in the HDF5 source code. According to the error message below, the file "Hdf5/Hdf5File.h" should contain the "#include &lt;string&gt;" directive. After including this statement, the binary files could be compiled for CUDA version. This might be of your interest for a future release.</p> <p>Small snippet of encountered error:<br /> In file included from ./MatrixClasses/BaseMatrix.h:36,<br /> from ./MatrixClasses/BaseFloatMatrix.h:35,<br /> from ./MatrixClasses/RealMatrix.h:35,<br /> from ./OutputStreams/BaseOutputStream.h:35,<br /> from ./OutputStreams/WholeDomainOutputStream.h:35,<br /> from OutputStreams/WholeDomainOutputStream.cpp:33:<br /> ./Hdf5/Hdf5File.h:471:25: error: ‘string’ in namespace ‘std’ does not name a type<br /> 471 | using MatrixName = std::string;<br /> | ^~~~~~<br /> ./Hdf5/Hdf5File.h:467:1: note: ‘std::string’ is defined in header ‘&lt;string&gt;’; did you forget to ‘#include &lt;string&gt;’?<br /> 466 | #include &lt;map&gt;<br /> +++ |+#include &lt;string&gt;<br /> 467 |<br /> ./Hdf5/Hdf5File.h:529:28: error: ‘string’ in namespace ‘std’ does not name a type<br /> 529 | void create(const std::string&amp; fileName,<br /> | ^~~~~~</p> <p>Kind regards,<br /> Daniek </p>