Journal Publications

Full-wave nonlinear ultrasound simulation on distributed clusters with applications in high-intensity focused ultrasound
J. Jaros, A. P. Rendell, and B. E. Treeby
arXiv:1408.4675 [physics.med-ph], 2014.
download pdf
Acoustic attenuation compensation in photoacoustic tomography using time-variant filtering
B. E. Treeby
J. Biomed. Opt., vol. 18, no. 3, p.036008, 2013.
doi:10.1117/1.JBO.18.3.036008 / download pdf
Modeling nonlinear wave propagation on nonuniform grids using a mapped k-space pseudospectral method
B. E. Treeby
IEEE Trans. Ultrason. Ferroelectr. Freq. Control, vol. 60, no. 10, pp. 2208-2213, 2013.
10.1109/TUFFC.2013.2812 / download pdf
Modeling nonlinear ultrasound propagation in heterogeneous media with power law absorption using a k-space pseudospectral method
B. E. Treeby, J. Jaros, A. P. Rendell, and B. T. Cox
J. Acoust. Soc. Am., vol. 131, no. 6, pp. 4324-4336, 2012.
DOI 10.1121/1.4712021 / download pdf
A first-order k-space model for elastic wave propagation in heterogeneous media
K. Firouzi, B. T. Cox, B. E. Treeby, and N. Saffari
J. Acoust. Soc. Am., vol. 132, no. 3, pp. 1271-1283, 2012.
DOI 10.1121/1.3588669 / download pdf
A k-space Green's function solution for acoustic initial value problems in homogeneous media with power law absorption
B. E. Treeby, and B. T. Cox
J. Acoust. Soc. Am., vol. 129, no. 6, pp. 3652-3660, 2011.
DOI 10.1121/1.3583537 / download pdf
Photoacoustic tomography in absorbing acoustic media using time reversal
B. E. Treeby, E. Z. Zhang, and B. T. Cox
Inverse Prob., vol. 26, no. 11, p. 115003, 2010.
DOI 10.1088/0266-5611/26/11/115003 / download pdf
Modeling power law absorption and dispersion for acoustic propagation using the fractional Laplacian
B. E. Treeby, and B. T. Cox
J. Acoust. Soc. Am., vol. 127, no. 5, pp. 2741-2748, 2010.
DOI 10.1121/1.3377056 / download pdf (see also erratum)
k-Wave: MATLAB toolbox for the simulation and reconstruction of photoacoustic wave-fields
B. E. Treeby, and B. T. Cox
J. Biomed. Opt., vol. 15, no. 2, p. 021314, 2010.
DOI 10.1117/1.3360308 / download pdf
Artifact trapping during time reversal photoacoustic imaging for acoustically heterogeneous media
B. T. Cox, and B. E. Treeby
IEEE Trans. Med. Imaging, vol. 29, no. 2, pp. 387-396, 2010.
DOI 10.1109/TMI.2009.2032358 / download pdf
k-space propagation models for acoustically heterogeneous media: Application to biomedical photoacoustics
B. T. Cox, S. Kara, S. R. Arridge, and P. C. Beard
J. Acoust. Soc. Am., vol. 121, no. 6, pp. 3453-3464, 2007.
DOI 10.1121/1.2717409 / download pdf
Fast calculation of pulsed photoacoustic fields in fluids using k-space methods
B. T. Cox, and P. C. Beard
J. Acoust. Soc. Am., vol. 177, no. 6, pp. 3616-3627, 2005.
DOI 10.1121/1.1920227 / download pdf

Book Chapters

Simulation of Ultrasound Fields
M. D. Verweij, B. E. Treeby, K. W. A. van Dongen, L. Demi
Comprehensive Biomedical Physics, Volume 2: X-Ray and Ultrasound Imaging, D. Panetta and M. Demi, Eds. Amsterdam: Elsevier, 2014, pp. 465-500. ISBN: 978-0-444-53633-4, DOI: 10.1016/B978-0-444-53632-7.00221-5.
Modeling Photoacoustic Propagation in Tissue Using k-Space Techniques
B. T. Cox, and P. C. Beard
Photoacoustic Imaging and Spectroscopy, L. V. Wang, Ed. London: CRC Press, 2009, pp. 25-34. ISBN-10:1420059912, ISBN-13:978-1420059915.

Conference Publications

Modelling Elastic Wave Propagation Using the k-Wave MATLAB Toolbox
B. E. Treeby, J. Jaros, D. Rohrbach, and B. T. Cox
IEEE International Ultrasonics Symposium, Chicago, USA, 2014.
download pdf
Comparison between two different full-wave methods for the computation of nonlinear ultrasound fields in inhomogeneous and attenuating tissue
L. Demi, B. E. Treeby, and M. D. Verweij
IEEE International Ultrasonics Symposium, Chicago, USA, 2014.
download pdf
Quantifying Numerical Errors in the Simulation of Transcranial Ultrasound using Pseudospectral Methods
J. L. Robertson, B. T. Cox, and B. E. Treeby
IEEE International Ultrasonics Symposium, Chicago, USA, 2014.
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Full-wave nonlinear ultrasound simulation in an axisymmetric coordinate system using the discrete sine and cosine transforms
E. Wise, and B. E. Treeby
IEEE International Ultrasonics Symposium, pp. 1374-1377, Prague, Czech Republic, 2013.
10.1109/ULTSYM.2013.0349 / download pdf
A computationally efficient elastic wave model for media with power-law absorption
B. E. Treeby, and B. T. Cox
IEEE International Ultrasonics Symposium, pp. 1037-1040, Prague, Czech Republic, 2013.
10.1109/ULTSYM.2013.0266 / download pdf
Modelling Nonlinear Ultrasound Propagation in Absorbing Media using the k-Wave Toolbox: Experimental Validation
K. Wang, E. Teoh, J. Jaros, and B. E. Treeby
IEEE International Ultrasonics Symposium, pp. 523-526, Dresden, Germany, 2012.
10.1109/ULTSYM.2012.0130 / download pdf
Use of multiple GPUs on shared memory multiprocessors for ultrasound propagation simulations
J. Jaros, B. E. Treeby, and A. P. Rendell
10th Australasian Symposium on Parallel and Distributed Computing, vol. 127, pp. 43-52, Melbourne, Australia, 2013.
download pdf
Time domain simulation of harmonic ultrasound images and beam patterns in 3D using the k-space pseudospectral method
B. E. Treeby, M. Tumen, and B. T. Cox
MICCAI, Part I (Springer, Heidelberg), vol. 6891, pp. 363-370, Toronto, Canada, 2011.
DOI 10.1007/978-3-642-23623-5_46 / download pdf
Acoustic attenuation compensation in photoacoustic tomography: Application to high resolution 3D imaging of vascular networks in mice
B. E. Treeby, J. G. Laufer, E. Z. Zhang, F. C. Norris, M. F. Lythgoe, P. C. Beard, and B. T. Cox
Proc. SPIE 7899, p. 78992Y, San Francisco, CA, USA, 2011.
DOI 10.1117/12.874530 / download pdf
Effect of sensor directionality on photoacoustic imaging: A study using the k-Wave toolbox
B. T. Cox, and B. E. Treeby
Proc. SPIE 7564, p. 75640I, San Francisco, CA, USA, 2010.
DOI 10.1117/12.841671 / download pdf
Fast, tissue-realistic models of photoacoustic wave propagation for homogeneous attenuating media
B. E. Treeby, and B. T. Cox
Proc. SPIE 7177, p. 717716, San Jose, CA, USA, 2009.
DOI 10.1117/12.806794 / download pdf
Experimental validation of photoacoustic k-space propagation models
B. T. Cox, J. G. Laufer, K. P. Kostli, and P. C. Beard
Proc. SPIE 5320, pp. 238-248, San Jose, CA, USA, 2004.
DOI 10.1117/12.531178 / download pdf


For a full list of other publications, see here and the Photoacoustic Imaging Group website.